Complete nucleotide sequence of the genomic RNA of poplar mosaic virus (Genus Carlavirus).
Identifieur interne : 004300 ( Main/Exploration ); précédent : 004299; suivant : 004301Complete nucleotide sequence of the genomic RNA of poplar mosaic virus (Genus Carlavirus).
Auteurs : C M Smith [Royaume-Uni] ; M M CampbellSource :
- Archives of virology [ 0304-8608 ] ; 2004.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Cadres ouverts de lecture (MeSH), Carlavirus (classification), Carlavirus (composition chimique), Carlavirus (génétique), Conformation d'acide nucléique (MeSH), Données de séquences moléculaires (MeSH), Gènes viraux (MeSH), Génome viral (MeSH), Phylogenèse (MeSH), Protéines de capside (génétique), Protéines virales (génétique), RNA replicase (génétique), Régions 3' non traduites (MeSH), Similitude de séquences (MeSH), Séquence nucléotidique (MeSH).
- MESH :
- composition chimique : Carlavirus.
- génétique : ARN viral, Carlavirus, Protéines de capside, Protéines virales, RNA replicase.
- Cadres ouverts de lecture, Conformation d'acide nucléique, Données de séquences moléculaires, Gènes viraux, Génome viral, Phylogenèse, Régions 3' non traduites, Similitude de séquences, Séquence nucléotidique.
English descriptors
- KwdEn :
- 3' Untranslated Regions (MeSH), Base Sequence (MeSH), Capsid Proteins (genetics), Carlavirus (chemistry), Carlavirus (classification), Carlavirus (genetics), Genes, Viral (MeSH), Genome, Viral (MeSH), Molecular Sequence Data (MeSH), Nucleic Acid Conformation (MeSH), Open Reading Frames (MeSH), Phylogeny (MeSH), RNA Replicase (genetics), RNA, Viral (genetics), Sequence Homology (MeSH), Viral Proteins (genetics).
- MESH :
- chemical , genetics : Capsid Proteins, RNA Replicase, RNA, Viral, Viral Proteins.
- chemical : 3' Untranslated Regions.
- chemistry : Carlavirus.
- classification : Carlavirus.
- genetics : Carlavirus.
- Base Sequence, Genes, Viral, Genome, Viral, Molecular Sequence Data, Nucleic Acid Conformation, Open Reading Frames, Phylogeny, Sequence Homology.
Abstract
The complete nucleotide sequence of the Poplar mosaic virus (PopMV) genome was determined. The genomic RNA of PopMV is 8,742 nucleotides in length. Comparative sequence analysis supports earlier research suggesting that this virus is a member of the genus Carlavirus. For example, as is the case for all carlaviruses, there are 6 predicted ORFs in the PopMV genome. The first ORF, ORF1, encodes a predicted helicase/replicase, which corresponds to ORF1 from other carlaviruses, while ORF2, ORF3, ORF4, ORF5 and ORF6 encode the three triple block proteins, the coat protein, and a putative nucleic acid-binding protein respectively.
DOI: 10.1007/s00705-004-0348-2
PubMed: 15593423
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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when="2004">2004</date><idno type="RBID">pubmed:15593423</idno><idno type="pmid">15593423</idno><idno type="doi">10.1007/s00705-004-0348-2</idno><idno type="wicri:Area/Main/Corpus">004149</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">004149</idno><idno type="wicri:Area/Main/Curation">004149</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">004149</idno><idno type="wicri:Area/Main/Exploration">004149</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Complete nucleotide sequence of the genomic RNA of poplar mosaic virus (Genus Carlavirus).</title><author><name sortKey="Smith, C M" sort="Smith, C M" uniqKey="Smith C" first="C M" last="Smith">C M Smith</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Sciences, University of Oxford, Oxford, UK.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Department of Plant Sciences, University of Oxford, Oxford</wicri:regionArea><placeName><settlement type="city">Oxford</settlement><region type="country">Angleterre</region><region type="comté" nuts="2">Oxfordshire</region></placeName><orgName type="university">Université d'Oxford</orgName></affiliation></author><author><name sortKey="Campbell, M M" sort="Campbell, M M" uniqKey="Campbell M" first="M M" last="Campbell">M M Campbell</name></author></analytic><series><title level="j">Archives of virology</title><idno type="ISSN">0304-8608</idno><imprint><date when="2004" type="published">2004</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>3' Untranslated Regions (MeSH)</term><term>Base Sequence (MeSH)</term><term>Capsid Proteins (genetics)</term><term>Carlavirus (chemistry)</term><term>Carlavirus (classification)</term><term>Carlavirus (genetics)</term><term>Genes, Viral (MeSH)</term><term>Genome, Viral (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Nucleic Acid Conformation (MeSH)</term><term>Open Reading Frames (MeSH)</term><term>Phylogeny (MeSH)</term><term>RNA Replicase (genetics)</term><term>RNA, Viral (genetics)</term><term>Sequence Homology (MeSH)</term><term>Viral Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term><term>Cadres ouverts de lecture (MeSH)</term><term>Carlavirus (classification)</term><term>Carlavirus (composition chimique)</term><term>Carlavirus (génétique)</term><term>Conformation d'acide nucléique (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Gènes viraux (MeSH)</term><term>Génome viral (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Protéines de capside (génétique)</term><term>Protéines virales (génétique)</term><term>RNA replicase (génétique)</term><term>Régions 3' non traduites (MeSH)</term><term>Similitude de séquences (MeSH)</term><term>Séquence nucléotidique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Capsid Proteins</term><term>RNA Replicase</term><term>RNA, Viral</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>3' Untranslated Regions</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Carlavirus</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Carlavirus</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Carlavirus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Carlavirus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term><term>Carlavirus</term><term>Protéines de capside</term><term>Protéines virales</term><term>RNA replicase</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Genes, Viral</term><term>Genome, Viral</term><term>Molecular Sequence Data</term><term>Nucleic Acid Conformation</term><term>Open Reading Frames</term><term>Phylogeny</term><term>Sequence Homology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cadres ouverts de lecture</term><term>Conformation d'acide nucléique</term><term>Données de séquences moléculaires</term><term>Gènes viraux</term><term>Génome viral</term><term>Phylogenèse</term><term>Régions 3' non traduites</term><term>Similitude de séquences</term><term>Séquence nucléotidique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The complete nucleotide sequence of the Poplar mosaic virus (PopMV) genome was determined. The genomic RNA of PopMV is 8,742 nucleotides in length. Comparative sequence analysis supports earlier research suggesting that this virus is a member of the genus Carlavirus. For example, as is the case for all carlaviruses, there are 6 predicted ORFs in the PopMV genome. The first ORF, ORF1, encodes a predicted helicase/replicase, which corresponds to ORF1 from other carlaviruses, while ORF2, ORF3, ORF4, ORF5 and ORF6 encode the three triple block proteins, the coat protein, and a putative nucleic acid-binding protein respectively.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">15593423</PMID><DateCompleted><Year>2005</Year><Month>01</Month><Day>03</Day></DateCompleted><DateRevised><Year>2019</Year><Month>08</Month><Day>15</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0304-8608</ISSN><JournalIssue CitedMedium="Print"><Volume>149</Volume><Issue>9</Issue><PubDate><Year>2004</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Archives of virology</Title><ISOAbbreviation>Arch Virol</ISOAbbreviation></Journal><ArticleTitle>Complete nucleotide sequence of the genomic RNA of poplar mosaic virus (Genus Carlavirus).</ArticleTitle><Pagination><MedlinePgn>1831-41</MedlinePgn></Pagination><Abstract><AbstractText>The complete nucleotide sequence of the Poplar mosaic virus (PopMV) genome was determined. The genomic RNA of PopMV is 8,742 nucleotides in length. Comparative sequence analysis supports earlier research suggesting that this virus is a member of the genus Carlavirus. For example, as is the case for all carlaviruses, there are 6 predicted ORFs in the PopMV genome. The first ORF, ORF1, encodes a predicted helicase/replicase, which corresponds to ORF1 from other carlaviruses, while ORF2, ORF3, ORF4, ORF5 and ORF6 encode the three triple block proteins, the coat protein, and a putative nucleic acid-binding protein respectively.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Smith</LastName><ForeName>C M</ForeName><Initials>CM</Initials><AffiliationInfo><Affiliation>Department of Plant Sciences, University of Oxford, Oxford, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Campbell</LastName><ForeName>M M</ForeName><Initials>MM</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>AY505475</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research 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MajorTopicYN="N">Nucleic Acid Conformation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016366" MajorTopicYN="N">Open Reading Frames</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012324" MajorTopicYN="N">RNA Replicase</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012367" MajorTopicYN="N">RNA, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017385" MajorTopicYN="N">Sequence Homology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014764" MajorTopicYN="N">Viral Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate 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